1 HisKA#1
83-146 aa · 64 aa · 21.5% of protein
Raw token
HisKA:83:0.000000000018:146:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DK471_RS00240
Histidine kinase, Classic
Clostridioides difficile · GCF_900096275
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900096275#DK471_RS00240Stable P2CS identifier used across views.
GenomeGCF_900096275Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 298 aa (52.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-283 aa · 92 aa · 30.9% of protein
Raw token
HATPase_c:192:5.1e-18:283:93:109- Raw architecture: HisKA:83:0.000000000018:146:64:64#HATPase_c:192:5.1e-18:283:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900096275::NZ_FMLL01000001.1::G00029
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44933-45829Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900096275::NZ_FMLL01000001.1::G00029Context members
DK471_RS00240
Partner locus tags
DK471_RS00240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021421910.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDK471_RS00240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FMLL01000001.1Sequence record reported by the local genomic context database.
Genomic interval44 933-45 829 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 933-45 829 ntGCF_900096275::NZ_FMLL01000001.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900096275::NZ_FMLL01000001.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FMLL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span44 933-45 829 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 933 nt45 829 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DK471_RS00240GCF_900096275#DK471_RS00240
HKClassicCurrent focus
44 933-45 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451745#QSK_RS18930Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2888713
Simplified PFAM architecture for HKOC_2888713
PFAM domain coverage: 151 / 298 aa (50.7%)
1 aa298 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-145] | HATPase_c[193-282]
- Domain count: 2
- Matched identifier: HKOC_2888713
- Positioned domains: HisKA 85-145 ; HATPase_c 193-282
Cluster members and taxonomy
Representative gene: GCF_000451745#QSK_RS18930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900096275
AssemblyASM90009627v1 · Scaffoldhaploid
Genome composition4 067 910 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key