1 Response_reg#1
19-125 aa · 107 aa · 43.0% of protein
Raw token
Response_reg:19:5.5e-19:125:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4S23_RS04525
Response regulator LytTR family
Clostridioides difficile · GCF_900015935
ClassRRTypeLytTRLength249 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_900015935#C4S23_RS04525Stable P2CS identifier used across views.
GenomeGCF_900015935Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
External referencesMIST4 C4S23_RS04525MIST4
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 249 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-240 aa · 87 aa · 34.9% of protein
Raw token
LytTR:154:8.72e-19:240:93:98- Raw architecture: Response_reg:19:5.5e-19:125:110:111#LytTR:154:8.72e-19:240:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4S23_RS04525Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900015935#C4S23_RS04525The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0742242
Simplified PFAM architecture for RROC_0742242
PFAM domain coverage: 197 / 249 aa (79.1%)
1 aa249 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[19-129] | LytTR[154-239]
- Domain count: 2
- Matched identifier: RROC_0742242
- Positioned domains: Response_reg 19-129 ; LytTR 154-239
Cluster members and taxonomy
Representative gene: GCF_900015935#C4S23_RS04525
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900015935
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 118 089 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key