1 HisKA_3#1
188-251 aa · 64 aa · 16.5% of protein
Raw token
HisKA_3:188:4.53e-20:251:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4020_RS16500
Histidine kinase, Classic
Clostridioides difficile · GCF_900014225
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900014225#A4020_RS16500Stable P2CS identifier used across views.
GenomeGCF_900014225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 387 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.000000000106:378:104:109- Raw architecture: HisKA_3:188:4.53e-20:251:65:68#HATPase_c:294:0.000000000106:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900014225::NZ_FAAJ01000038.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8790-10593Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900014225::NZ_FAAJ01000038.1::G00049Context members
A4020_RS16495A4020_RS16500
Partner locus tags
A4020_RS16495A4020_RS16500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032547305.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4020_RS16500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAAJ01000038.1Sequence record reported by the local genomic context database.
Genomic interval9 430-10 593 nt1 164 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 790-10 593 ntGCF_900014225::NZ_FAAJ01000038.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900014225::NZ_FAAJ01000038.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAAJ01000038.1All displayed genes belong to this local TCS context.
Neighborhood span8 790-10 593 nt1 804 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 790 nt10 593 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A4020_RS16495GCF_900014225#A4020_RS16495
RRNarL
8 790-9 437 nt · Reverse (-)
A4020_RS16500GCF_900014225#A4020_RS16500
HKClassicCurrent focus
9 430-10 593 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449185#QCW_RS06390Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550383
Simplified PFAM architecture for HKOC_2550383
PFAM domain coverage: 149 / 387 aa (38.5%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-251] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550383
- Positioned domains: HisKA_3 188-251 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000449185#QCW_RS06390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900014225
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 068 388 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 42 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key