1 HisKA#1
449-514 aa · 66 aa · 9.8% of protein
Raw token
HisKA:449:0.00000000477:514:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4020_RS05080
Histidine kinase, Classic
Clostridioides difficile · GCF_900014225
ClassHKTypeClassicLength671 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_900014225#A4020_RS05080Stable P2CS identifier used across views.
GenomeGCF_900014225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 671 aa (25.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
567-668 aa · 102 aa · 15.2% of protein
Raw token
HATPase_c:567:1.43e-29:668:102:109- Raw architecture: HisKA:449:0.00000000477:514:66:64#HATPase_c:567:1.43e-29:668:102:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_900014225::NZ_FAAJ01000006.1::G00016
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span4517-8011Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900014225::NZ_FAAJ01000006.1::G00016Context members
A4020_RS05075A4020_RS05080A4020_RS05085
Partner locus tags
A4020_RS05075A4020_RS05080A4020_RS05085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_045146397.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4020_RS05080Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAAJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval5 247-7 262 nt2 016 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 517-8 011 ntGCF_900014225::NZ_FAAJ01000006.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900014225::NZ_FAAJ01000006.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAAJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span4 517-8 011 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 517 nt8 011 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
A4020_RS05075GCF_900014225#A4020_RS05075
RROmpR
4 517-5 197 nt · Reverse (-)
A4020_RS05080GCF_900014225#A4020_RS05080
HKClassicCurrent focus
5 247-7 262 nt · Reverse (-)
A4020_RS05085GCF_900014225#A4020_RS05085
RROmpR
7 334-8 011 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001704795#DCQ01_RS09510Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0842874
Simplified PFAM architecture for HKOC_0842874
PFAM domain coverage: 168 / 671 aa (25.0%)
1 aa671 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[450-514] | HATPase_c[565-667]
- Domain count: 2
- Matched identifier: HKOC_0842874
- Positioned domains: HisKA 450-514 ; HATPase_c 565-667
Cluster members and taxonomy
Representative gene: GCF_001704795#DCQ01_RS09510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900014225
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 068 388 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 42 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key