1 Response_reg#1
5-115 aa · 111 aa · 47.8% of protein
Raw token
Response_reg:5:2.85e-30:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4R71_RS06655
Response regulator OmpR family
Clostridioides difficile · GCF_900013385
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900013385#C4R71_RS06655Stable P2CS identifier used across views.
GenomeGCF_900013385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:152:3.64e-34:228:77:77- Raw architecture: Response_reg:5:2.85e-30:115:111:111#Trans_reg_C:152:3.64e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900013385::NZ_FAKP01000012.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29771-31905Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900013385::NZ_FAKP01000012.1::G00017Context members
C4R71_RS06650C4R71_RS06655
Partner locus tags
C4R71_RS06650C4R71_RS06655
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009889742.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QYP3Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QYP3_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4R71_RS06655Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAKP01000012.1Sequence record reported by the local genomic context database.
Genomic interval31 207-31 905 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 771-31 905 ntGCF_900013385::NZ_FAKP01000012.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900013385::NZ_FAKP01000012.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAKP01000012.1All displayed genes belong to this local TCS context.
Neighborhood span29 771-31 905 nt2 135 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 771 nt31 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C4R71_RS06650GCF_900013385#C4R71_RS06650
HKClassic
29 771-31 204 nt · Reverse (-)
C4R71_RS06655GCF_900013385#C4R71_RS06655
RROmpRCurrent focus
31 207-31 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119292
Simplified PFAM architecture for RROC_1119292
PFAM domain coverage: 188 / 232 aa (81.0%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1119292
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900013385
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 279 441 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key