1 Response_reg#1
1-110 aa · 110 aa · 50.7% of protein
Raw token
Response_reg:1:7.93e-27:110:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4Y60_RS05000
Response regulator OmpR family
Clostridioides difficile · GCF_900012035
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900012035#A4Y60_RS05000Stable P2CS identifier used across views.
GenomeGCF_900012035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 217 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 33.6% of protein
Raw token
Trans_reg_C:145:1.19e-22:217:74:77- Raw architecture: Response_reg:1:7.93e-27:110:111:111#Trans_reg_C:145:1.19e-22:217:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900012035::NZ_FAAL01000006.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span57276-57929Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900012035::NZ_FAAL01000006.1::G00019Context members
A4Y60_RS05000
Partner locus tags
A4Y60_RS05000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022619262.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4Y60_RS05000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAAL01000006.1Sequence record reported by the local genomic context database.
Genomic interval57 276-57 929 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 276-57 929 ntGCF_900012035::NZ_FAAL01000006.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900012035::NZ_FAAL01000006.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAAL01000006.1All displayed genes belong to this local TCS context.
Neighborhood span57 276-57 929 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 276 nt57 929 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A4Y60_RS05000GCF_900012035#A4Y60_RS05000
RROmpRCurrent focus
57 276-57 929 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0214545Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847432
Simplified PFAM architecture for RROC_1847432
PFAM domain coverage: 183 / 217 aa (84.3%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[1-109] | Trans_reg_C[144-217]
- Domain count: 2
- Matched identifier: RROC_1847432
- Positioned domains: Response_reg 1-109 ; Response_reg 1-109 ; Trans_reg_C 144-217 ; Trans_reg_C 144-217
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0214545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900012035
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 117 060 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key