1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.37e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4Y60_RS03595
Response regulator OmpR family
Clostridioides difficile · GCF_900012035
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_900012035#A4Y60_RS03595Stable P2CS identifier used across views.
GenomeGCF_900012035Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.07e-28:232:78:77- Raw architecture: Response_reg:5:1.37e-36:114:111:111#Trans_reg_C:155:4.07e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_900012035::NZ_FAAL01000004.1::G00013
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span39481-45206Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900012035::NZ_FAAL01000004.1::G00013Context members
A4Y60_RS03590A4Y60_RS03595A4Y60_RS03600A4Y60_RS03605A4Y60_RS03610
Partner locus tags
A4Y60_RS03590A4Y60_RS03595A4Y60_RS03600A4Y60_RS03605A4Y60_RS03610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891729.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N7P0Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N7P0_CLODCDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4Y60_RS03595Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAAL01000004.1Sequence record reported by the local genomic context database.
Genomic interval40 632-41 330 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 481-45 206 ntGCF_900012035::NZ_FAAL01000004.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900012035::NZ_FAAL01000004.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAAL01000004.1All displayed genes belong to this local TCS context.
Neighborhood span39 481-45 206 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 481 nt45 206 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
A4Y60_RS03590GCF_900012035#A4Y60_RS03590
HKClassic
39 481-40 596 nt · Reverse (-)
A4Y60_RS03595GCF_900012035#A4Y60_RS03595
RROmpRCurrent focus
40 632-41 330 nt · Reverse (-)
A4Y60_RS03600GCF_900012035#A4Y60_RS03600
RROmpR
41 712-42 392 nt · Reverse (-)
A4Y60_RS03605GCF_900012035#A4Y60_RS03605
HKClassic
42 442-44 457 nt · Reverse (-)
A4Y60_RS03610GCF_900012035#A4Y60_RS03610
RROmpR
44 529-45 206 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0216520Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119294
Simplified PFAM architecture for RROC_1119294
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1119294
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0216520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900012035
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 117 060 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 103 · HK 49 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key