1 PAS_4#1
246-354 aa · 109 aa · 18.0% of protein
Raw token
PAS_4:246:0.0000000000336:354:115:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C4Q47_RS16285
Histidine kinase, Classic
Clostridioides difficile · GCF_900012005
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_900012005#C4Q47_RS16285Stable P2CS identifier used across views.
GenomeGCF_900012005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
External referencesMIST4 C4Q47_RS16285MIST4
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage290 / 604 aa (48.0%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 HisKA#2
363-432 aa · 70 aa · 11.6% of protein
Raw token
HisKA:363:9.45e-16:432:70:643 HATPase_c#3
479-589 aa · 111 aa · 18.4% of protein
Raw token
HATPase_c:479:1.07e-27:589:111:109- Raw architecture: PAS_4:246:0.0000000000336:354:115:110#HisKA:363:9.45e-16:432:70:64#HATPase_c:479:1.07e-27:589:111:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC4Q47_RS16285Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900012005#C4Q47_RS16285The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1036573
Simplified PFAM architecture for HKOC_1036573
PFAM domain coverage: 290 / 604 aa (48.0%)
1 aa604 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[246-354] | HisKA[363-432] | HATPase_c[479-589]
- Domain count: 3
- Matched identifier: HKOC_1036573
- Positioned domains: PAS_4 246-354 ; HisKA 363-432 ; HATPase_c 479-589
Cluster members and taxonomy
Representative gene: GCF_900012005#C4Q47_RS16285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900012005
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition3 989 196 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 46 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key