1 HisKA_3#1
94-159 aa · 66 aa · 22.5% of protein
Raw token
HisKA_3:94:1.26e-19:159:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4Z38_RS18175
Histidine kinase, Classic
Clostridioides difficile · GCF_900009415
ClassHKTypeClassicLength293 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_900009415#A4Z38_RS18175Stable P2CS identifier used across views.
GenomeGCF_900009415Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length293 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 293 aa (51.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa293 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-284 aa · 85 aa · 29.0% of protein
Raw token
HATPase_c:200:0.000000000117:284:104:109- Raw architecture: HisKA_3:94:1.26e-19:159:67:68#HATPase_c:200:0.000000000117:284:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_900009415::NZ_FAAG01000055.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-1523Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900009415::NZ_FAAG01000055.1::G00052Context members
A4Z38_RS18175A4Z38_RS18180
Partner locus tags
A4Z38_RS18175A4Z38_RS18180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074091118.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4Z38_RS18175Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAAG01000055.1Sequence record reported by the local genomic context database.
Genomic interval1-883 nt883 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 523 ntGCF_900009415::NZ_FAAG01000055.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900009415::NZ_FAAG01000055.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAAG01000055.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 523 nt1 523 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 523 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
A4Z38_RS18175GCF_900009415#A4Z38_RS18175
HKClassicCurrent focus
1-883 nt · Forward (+)
A4Z38_RS18180GCF_900009415#A4Z38_RS18180
RRNarL
876-1 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900009415#A4Z38_RS18175The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2893822
Simplified PFAM architecture for HKOC_2893822
PFAM domain coverage: 150 / 293 aa (51.2%)
1 aa293 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[94-158] | HATPase_c[200-284]
- Domain count: 2
- Matched identifier: HKOC_2893822
- Positioned domains: HisKA_3 94-158 ; HATPase_c 200-284
Cluster members and taxonomy
Representative gene: GCF_900009415#A4Z38_RS18175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900009415
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 120 635 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key