1 Response_reg#1
3-107 aa · 105 aa · 44.3% of protein
Raw token
Response_reg:3:8.52e-17:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
A4X89_RS11580
Response regulator LytTR family
Clostridioides difficile · GCF_900008785
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_900008785#A4X89_RS11580Stable P2CS identifier used across views.
GenomeGCF_900008785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 237 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-228 aa · 93 aa · 39.2% of protein
Raw token
LytTR:136:3.35e-17:228:97:98- Raw architecture: Response_reg:3:8.52e-17:107:108:111#LytTR:136:3.35e-17:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_900008785::NZ_FAJB01000011.1::G00032
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span76796-77509Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_900008785::NZ_FAJB01000011.1::G00032Context members
A4X89_RS11580
Partner locus tags
A4X89_RS11580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074438443.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagA4X89_RS11580Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_FAJB01000011.1Sequence record reported by the local genomic context database.
Genomic interval76 796-77 509 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 796-77 509 ntGCF_900008785::NZ_FAJB01000011.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_900008785::NZ_FAJB01000011.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_FAJB01000011.1All displayed genes belong to this local TCS context.
Neighborhood span76 796-77 509 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 796 nt77 509 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
A4X89_RS11580GCF_900008785#A4X89_RS11580
RRLytTRCurrent focus
76 796-77 509 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_900008785#A4X89_RS11580The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0985808
Simplified PFAM architecture for RROC_0985808
PFAM domain coverage: 201 / 237 aa (84.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[137-228]
- Domain count: 2
- Matched identifier: RROC_0985808
- Positioned domains: Response_reg 4-112 ; LytTR 137-228
Cluster members and taxonomy
Representative gene: GCF_900008785#A4X89_RS11580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_900008785
AssemblyPeptoclostridium difficile · Contighaploid
Genome composition4 169 839 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key