1 Response_reg#1
6-111 aa · 106 aa · 47.1% of protein
Raw token
Response_reg:6:5.43e-31:111:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0BP_RS20200
Response regulator OmpR family
Bacillus nitratireducens · GCF_045371125
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_045371125#ACH0BP_RS20200Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:147:1.21e-29:222:77:77- Raw architecture: Response_reg:6:5.43e-31:111:107:111#Trans_reg_C:147:1.21e-29:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_045371125::NZ_JBIQDN010000005.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span436228-438283Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH0BP_20155RefSeq proteinWP_000781976.1
Context group ID
GCF_045371125::NZ_JBIQDN010000005.1::G00061Context members
ACH0BP_RS20200ACH0BP_RS20205
Partner locus tags
ACH0BP_RS20200ACH0BP_RS20205
Partner old locus tags
ACH0BP_20155ACH0BP_20160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000781976.1Primary protein accession used for annex mappings.
UniProt accessionA0ABU6PEM7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABU6PEM7_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0BP_RS20200Primary locus identifier stored in the genes table.
Old locus tagACH0BP_20155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIQDN010000005.1Sequence record reported by the local genomic context database.
Genomic interval436 228-436 905 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span436 228-438 283 ntGCF_045371125::NZ_JBIQDN010000005.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045371125::NZ_JBIQDN010000005.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIQDN010000005.1All displayed genes belong to this local TCS context.
Neighborhood span436 228-438 283 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
436 228 nt438 283 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH0BP_RS20200GCF_045371125#ACH0BP_RS20200
RROmpRCurrent focus
436 228-436 905 nt · Forward (+)
ACH0BP_RS20205GCF_045371125#ACH0BP_RS20205
HKClassic
436 907-438 283 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884135#BAU23_RS25090Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1473824
Simplified PFAM architecture for RROC_1473824
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-111] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1473824
- Positioned domains: Response_reg 6-111 ; Response_reg 6-111 ; Trans_reg_C 147-222 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_001884135#BAU23_RS25090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 193 · GCF_045371125
AssemblyASM4537112v1 · Scaffoldhaploid
Genome composition5 823 887 bp · 35,0% GCBacillus nitratireducens
Signal transduction countsGenes 128 · HK 70 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key