1 Response_reg#1
3-112 aa · 110 aa · 50.0% of protein
Raw token
Response_reg:3:2.99e-25:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUI_RS00145
Response regulator OmpR family
Roseburia faecis · GCF_045061065
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_045061065#ACIRUI_RS00145Stable P2CS identifier used across views.
GenomeGCF_045061065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 220 aa (84.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-220 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:146:4.64e-26:220:76:77- Raw architecture: Response_reg:3:2.99e-25:112:111:111#Trans_reg_C:146:4.64e-26:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_045061065::NZ_CP173697.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span20601-21263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUI_00145RefSeq proteinWP_055068663.1
Context group ID
GCF_045061065::NZ_CP173697.1::G00002Context members
ACIRUI_RS00145
Partner locus tags
ACIRUI_RS00145
Partner old locus tags
ACIRUI_00145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068663.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WXG3Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WXG3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUI_RS00145Primary locus identifier stored in the genes table.
Old locus tagACIRUI_00145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173697.1Sequence record reported by the local genomic context database.
Genomic interval20 601-21 263 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 601-21 263 ntGCF_045061065::NZ_CP173697.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045061065::NZ_CP173697.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173697.1All displayed genes belong to this local TCS context.
Neighborhood span20 601-21 263 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 601 nt21 263 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACIRUI_RS00145GCF_045061065#ACIRUI_RS00145
RROmpRCurrent focus
20 601-21 263 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS14050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1727219
Simplified PFAM architecture for RROC_1727219
PFAM domain coverage: 184 / 220 aa (83.6%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1727219
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS14050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_045061065
AssemblyASM4506106v1 · Complete Genomehaploid
Genome composition3 385 415 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 46 · RR 62CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key