1 Response_reg#1
11-124 aa · 114 aa · 45.4% of protein
Raw token
Response_reg:11:0.0000000000657:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACIRUI_RS00055
Response regulator LytTR family
Roseburia faecis · GCF_045061065
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_045061065#ACIRUI_RS00055Stable P2CS identifier used across views.
GenomeGCF_045061065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage207 / 251 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
146-238 aa · 93 aa · 37.1% of protein
Raw token
LytTR:146:0.00000000000000631:238:98:98- Raw architecture: Response_reg:11:0.0000000000657:124:117:111#LytTR:146:0.00000000000000631:238:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_045061065::NZ_CP173697.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6237-6992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACIRUI_00055RefSeq proteinWP_055068777.1
Context group ID
GCF_045061065::NZ_CP173697.1::G00001Context members
ACIRUI_RS00055
Partner locus tags
ACIRUI_RS00055
Partner old locus tags
ACIRUI_00055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055068777.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WY98Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WY98_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACIRUI_RS00055Primary locus identifier stored in the genes table.
Old locus tagACIRUI_00055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP173697.1Sequence record reported by the local genomic context database.
Genomic interval6 237-6 992 nt756 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 237-6 992 ntGCF_045061065::NZ_CP173697.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_045061065::NZ_CP173697.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP173697.1All displayed genes belong to this local TCS context.
Neighborhood span6 237-6 992 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 237 nt6 992 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACIRUI_RS00055GCF_045061065#ACIRUI_RS00055
RRLytTRCurrent focus
6 237-6 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462365#DXD06_RS09285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0713862
Simplified PFAM architecture for RROC_0713862
PFAM domain coverage: 207 / 251 aa (82.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[11-123] | LytTR[145-238]
- Domain count: 2
- Matched identifier: RROC_0713862
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; LytTR 145-238 ; LytTR 145-238
Cluster members and taxonomy
Representative gene: GCF_003462365#DXD06_RS09285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_045061065
AssemblyASM4506106v1 · Complete Genomehaploid
Genome composition3 385 415 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 110 · HK 46 · RR 62CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key