1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:2.21e-22:113:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH964_RS22650
Response regulator OmpR family
Bacillus sp. RC92 · GCF_044908975
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908975#ABH964_RS22650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 235 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 31.9% of protein
Raw token
Trans_reg_C:150:3.52e-19:224:77:77- Raw architecture: Response_reg:4:2.21e-22:113:114:111#Trans_reg_C:150:3.52e-19:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908975::NZ_JBIYDU010000010.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8429-10119Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH964_004560RefSeq proteinWP_404477140.1
Context group ID
GCF_044908975::NZ_JBIYDU010000010.1::G00063Context members
ABH964_RS22645ABH964_RS22650
Partner locus tags
ABH964_RS22645ABH964_RS22650
Partner old locus tags
ABH964_004559ABH964_004560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404477140.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH964_RS22650Primary locus identifier stored in the genes table.
Old locus tagABH964_004560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDU010000010.1Sequence record reported by the local genomic context database.
Genomic interval9 412-10 119 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 429-10 119 ntGCF_044908975::NZ_JBIYDU010000010.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908975::NZ_JBIYDU010000010.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDU010000010.1All displayed genes belong to this local TCS context.
Neighborhood span8 429-10 119 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 429 nt10 119 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH964_RS22645GCF_044908975#ABH964_RS22645
HKClassic
8 429-9 415 nt · Reverse (-)
ABH964_RS22650GCF_044908975#ABH964_RS22650
RROmpRCurrent focus
9 412-10 119 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908975#ABH964_RS22650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1044435
Simplified PFAM architecture for RROC_1044435
PFAM domain coverage: 183 / 235 aa (77.9%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-224]
- Domain count: 2
- Matched identifier: RROC_1044435
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 151-224
Cluster members and taxonomy
Representative gene: GCF_044908975#ABH964_RS22650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 293 · GCF_044908975
AssemblyASM4490897v1 · Contighaploid
Genome composition5 692 938 bp · 35,0% GCBacillus sp. RC92
Signal transduction countsGenes 141 · HK 76 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key