1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.4e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH949_RS18370
Response regulator OmpR family
Bacillus sp. RC230 · GCF_044908795
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908795#ABH949_RS18370Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:148:9.02e-31:223:77:77- Raw architecture: Response_reg:4:1.4e-33:113:111:111#Trans_reg_C:148:9.02e-31:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908795::NZ_JBIYDO010000008.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59960-62049Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH949_003677RefSeq proteinWP_002032425.1
Context group ID
GCF_044908795::NZ_JBIYDO010000008.1::G00050Context members
ABH949_RS18370ABH949_RS18375
Partner locus tags
ABH949_RS18370ABH949_RS18375
Partner old locus tags
ABH949_003677ABH949_003678
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002032425.1Primary protein accession used for annex mappings.
UniProt accessionR8HN13Primary UniProt accession resolved in the annex database.
UniProt IDR8HN13_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH949_RS18370Primary locus identifier stored in the genes table.
Old locus tagABH949_003677Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDO010000008.1Sequence record reported by the local genomic context database.
Genomic interval59 960-60 634 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 960-62 049 ntGCF_044908795::NZ_JBIYDO010000008.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908795::NZ_JBIYDO010000008.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDO010000008.1All displayed genes belong to this local TCS context.
Neighborhood span59 960-62 049 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 960 nt62 049 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH949_RS18370GCF_044908795#ABH949_RS18370
RROmpRCurrent focus
59 960-60 634 nt · Forward (+)
ABH949_RS18375GCF_044908795#ABH949_RS18375
HKClassic
60 631-62 049 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS11695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528473
Simplified PFAM architecture for RROC_1528473
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1528473
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS11695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 283 · GCF_044908795
AssemblyASM4490879v1 · Contighaploid
Genome composition5 828 371 bp · 35,0% GCBacillus sp. RC230
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key