1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.99e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH949_RS16385
Response regulator OmpR family
Bacillus sp. RC230 · GCF_044908795
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908795#ABH949_RS16385Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:155:1.99e-25:225:72:77- Raw architecture: Response_reg:4:1.99e-25:113:111:111#Trans_reg_C:155:1.99e-25:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908795::NZ_JBIYDO010000006.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span310428-312121Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH949_003280RefSeq proteinWP_016120219.1
Context group ID
GCF_044908795::NZ_JBIYDO010000006.1::G00037Context members
ABH949_RS16385ABH949_RS16390
Partner locus tags
ABH949_RS16385ABH949_RS16390
Partner old locus tags
ABH949_003280ABH949_003281
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120219.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSA8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSA8_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH949_RS16385Primary locus identifier stored in the genes table.
Old locus tagABH949_003280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDO010000006.1Sequence record reported by the local genomic context database.
Genomic interval310 428-311 132 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span310 428-312 121 ntGCF_044908795::NZ_JBIYDO010000006.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908795::NZ_JBIYDO010000006.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDO010000006.1All displayed genes belong to this local TCS context.
Neighborhood span310 428-312 121 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
310 428 nt312 121 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH949_RS16385GCF_044908795#ABH949_RS16385
RROmpRCurrent focus
310 428-311 132 nt · Forward (+)
ABH949_RS16390GCF_044908795#ABH949_RS16390
HKClassic
311 135-312 121 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS10930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048741
Simplified PFAM architecture for RROC_1048741
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1048741
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 283 · GCF_044908795
AssemblyASM4490879v1 · Contighaploid
Genome composition5 828 371 bp · 35,0% GCBacillus sp. RC230
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key