1 HAMP#1
306-373 aa · 68 aa · 11.1% of protein
Raw token
HAMP:306:0.000000000000787:373:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH949_RS10095
Histidine kinase, Classic
Bacillus sp. RC230 · GCF_044908795
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908795#ABH949_RS10095Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 615 aa (39.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
393-457 aa · 65 aa · 10.6% of protein
Raw token
HisKA:393:6.12e-16:457:65:643 HATPase_c#3
501-608 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:501:9.79e-20:608:109:109- Raw architecture: HAMP:306:0.000000000000787:373:68:69#HisKA:393:6.12e-16:457:65:64#HATPase_c:501:9.79e-20:608:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908795::NZ_JBIYDO010000003.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span329431-331955Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH949_002014RefSeq proteinWP_404489848.1
Context group ID
GCF_044908795::NZ_JBIYDO010000003.1::G00019Context members
ABH949_RS10095ABH949_RS10100
Partner locus tags
ABH949_RS10095ABH949_RS10100
Partner old locus tags
ABH949_002014ABH949_002015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404489848.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH949_RS10095Primary locus identifier stored in the genes table.
Old locus tagABH949_002014Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDO010000003.1Sequence record reported by the local genomic context database.
Genomic interval329 431-331 278 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span329 431-331 955 ntGCF_044908795::NZ_JBIYDO010000003.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908795::NZ_JBIYDO010000003.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDO010000003.1All displayed genes belong to this local TCS context.
Neighborhood span329 431-331 955 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
329 431 nt331 955 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH949_RS10095GCF_044908795#ABH949_RS10095
HKClassicCurrent focus
329 431-331 278 nt · Reverse (-)
ABH949_RS10100GCF_044908795#ABH949_RS10100
RROmpR
331 275-331 955 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908295#ABH953_RS24880Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0990891
Simplified PFAM architecture for HKOC_0990891
PFAM domain coverage: 224 / 615 aa (36.4%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[323-373] | HisKA[393-457] | HATPase_c[502-609]
- Domain count: 3
- Matched identifier: HKOC_0990891
- Positioned domains: HAMP 323-373 ; HisKA 393-457 ; HATPase_c 502-609
Cluster members and taxonomy
Representative gene: GCF_044908295#ABH953_RS24880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 283 · GCF_044908795
AssemblyASM4490879v1 · Contighaploid
Genome composition5 828 371 bp · 35,0% GCBacillus sp. RC230
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key