1 HAMP#1
306-373 aa · 68 aa · 11.1% of protein
Raw token
HAMP:306:0.00000000000077:373:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH963_RS20235
Histidine kinase, Classic
Bacillus sp. RC55 · GCF_044908625
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908625#ABH963_RS20235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 615 aa (39.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation3 items
2 HisKA#2
393-457 aa · 65 aa · 10.6% of protein
Raw token
HisKA:393:5.2e-16:457:65:643 HATPase_c#3
501-608 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:501:5.66e-20:608:109:109- Raw architecture: HAMP:306:0.00000000000077:373:68:69#HisKA:393:5.2e-16:457:65:64#HATPase_c:501:5.66e-20:608:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908625::NZ_JBIYDK010000008.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216365-218889Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH963_004072RefSeq proteinWP_144513808.1
Context group ID
GCF_044908625::NZ_JBIYDK010000008.1::G00048Context members
ABH963_RS20230ABH963_RS20235
Partner locus tags
ABH963_RS20230ABH963_RS20235
Partner old locus tags
ABH963_004071ABH963_004072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_144513808.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH963_RS20235Primary locus identifier stored in the genes table.
Old locus tagABH963_004072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDK010000008.1Sequence record reported by the local genomic context database.
Genomic interval217 042-218 889 nt1 848 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 365-218 889 ntGCF_044908625::NZ_JBIYDK010000008.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908625::NZ_JBIYDK010000008.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDK010000008.1All displayed genes belong to this local TCS context.
Neighborhood span216 365-218 889 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 365 nt218 889 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH963_RS20230GCF_044908625#ABH963_RS20230
RROmpR
216 365-217 045 nt · Forward (+)
ABH963_RS20235GCF_044908625#ABH963_RS20235
HKClassicCurrent focus
217 042-218 889 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_007673715#FS506_RS28200Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0989478
Simplified PFAM architecture for HKOC_0989478
PFAM domain coverage: 224 / 615 aa (36.4%)
1 aa615 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[323-373] | HisKA[393-457] | HATPase_c[502-609]
- Domain count: 3
- Matched identifier: HKOC_0989478
- Positioned domains: HAMP 323-373 ; HisKA 393-457 ; HATPase_c 502-609
Cluster members and taxonomy
Representative gene: GCF_007673715#FS506_RS28200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 292 · GCF_044908625
AssemblyASM4490862v1 · Contighaploid
Genome composition5 774 376 bp · 35,0% GCBacillus sp. RC55
Signal transduction countsGenes 141 · HK 75 · RR 66CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key