1 HAMP#1
67-126 aa · 60 aa · 16.5% of protein
Raw token
HAMP:67:0.000000232:126:60:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH963_RS17260
Histidine kinase, Classic
Bacillus sp. RC55 · GCF_044908625
ClassHKTypeClassicLength364 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908625#ABH963_RS17260Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length364 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 364 aa (65.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa364 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-204 aa · 68 aa · 18.7% of protein
Raw token
HisKA:137:0.00000000000271:204:68:643 HATPase_c#3
249-360 aa · 112 aa · 30.8% of protein
Raw token
HATPase_c:249:1.69e-24:360:113:109- Raw architecture: HAMP:67:0.000000232:126:60:69#HisKA:137:0.00000000000271:204:68:64#HATPase_c:249:1.69e-24:360:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908625::NZ_JBIYDK010000006.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span147969-149754Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH963_003471RefSeq proteinWP_002165502.1
Context group ID
GCF_044908625::NZ_JBIYDK010000006.1::G00044Context members
ABH963_RS17255ABH963_RS17260
Partner locus tags
ABH963_RS17255ABH963_RS17260
Partner old locus tags
ABH963_003470ABH963_003471
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002165502.1Primary protein accession used for annex mappings.
UniProt accessionJ8EVW0Primary UniProt accession resolved in the annex database.
UniProt IDJ8EVW0_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH963_RS17260Primary locus identifier stored in the genes table.
Old locus tagABH963_003471Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDK010000006.1Sequence record reported by the local genomic context database.
Genomic interval148 660-149 754 nt1 095 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span147 969-149 754 ntGCF_044908625::NZ_JBIYDK010000006.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908625::NZ_JBIYDK010000006.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDK010000006.1All displayed genes belong to this local TCS context.
Neighborhood span147 969-149 754 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 969 nt149 754 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH963_RS17255GCF_044908625#ABH963_RS17255
RROmpR
147 969-148 667 nt · Forward (+)
ABH963_RS17260GCF_044908625#ABH963_RS17260
HKClassicCurrent focus
148 660-149 754 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS13850Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2724761
Simplified PFAM architecture for HKOC_2724761
PFAM domain coverage: 222 / 364 aa (61.0%)
1 aa364 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[81-125] | HisKA[138-203] | HATPase_c[249-359]
- Domain count: 3
- Matched identifier: HKOC_2724761
- Positioned domains: HAMP 81-125 ; HisKA 138-203 ; HATPase_c 249-359
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS13850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 292 · GCF_044908625
AssemblyASM4490862v1 · Contighaploid
Genome composition5 774 376 bp · 35,0% GCBacillus sp. RC55
Signal transduction countsGenes 141 · HK 75 · RR 66CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key