1 HisKA_3#1
185-245 aa · 61 aa · 15.8% of protein
Raw token
HisKA_3:185:1.61e-20:245:61:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH963_RS13065
Histidine kinase, Classic
Bacillus sp. RC55 · GCF_044908625
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908625#ABH963_RS13065Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage149 / 385 aa (38.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-380 aa · 88 aa · 22.9% of protein
Raw token
HATPase_c:293:0.00000000000337:380:104:109- Raw architecture: HisKA_3:185:1.61e-20:245:61:68#HATPase_c:293:0.00000000000337:380:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908625::NZ_JBIYDK010000004.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122205-124027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH963_002619RefSeq proteinWP_002185299.1
Context group ID
GCF_044908625::NZ_JBIYDK010000004.1::G00027Context members
ABH963_RS13065ABH963_RS13070
Partner locus tags
ABH963_RS13065ABH963_RS13070
Partner old locus tags
ABH963_002619ABH963_002620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002185299.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSH2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSH2_BACMYDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH963_RS13065Primary locus identifier stored in the genes table.
Old locus tagABH963_002619Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDK010000004.1Sequence record reported by the local genomic context database.
Genomic interval122 205-123 362 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span122 205-124 027 ntGCF_044908625::NZ_JBIYDK010000004.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908625::NZ_JBIYDK010000004.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span122 205-124 027 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 205 nt124 027 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH963_RS13065GCF_044908625#ABH963_RS13065
HKClassicCurrent focus
122 205-123 362 nt · Forward (+)
ABH963_RS13070GCF_044908625#ABH963_RS13070
RRNarL
123 359-124 027 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS15095Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2564999
Simplified PFAM architecture for HKOC_2564999
PFAM domain coverage: 152 / 385 aa (39.5%)
1 aa385 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[185-246] | HATPase_c[290-379]
- Domain count: 2
- Matched identifier: HKOC_2564999
- Positioned domains: HisKA_3 185-246 ; HATPase_c 290-379
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS15095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 292 · GCF_044908625
AssemblyASM4490862v1 · Contighaploid
Genome composition5 774 376 bp · 35,0% GCBacillus sp. RC55
Signal transduction countsGenes 141 · HK 75 · RR 66CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key