1 Response_reg#1
5-116 aa · 112 aa · 91.8% of protein
Raw token
Response_reg:5:1.54e-29:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH963_RS04310
Response regulator, CheY family
Bacillus sp. RC55 · GCF_044908625
ClassRRTypeCheYLength122 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908625#ABH963_RS04310Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length122 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 122 aa (91.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa122 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.54e-29:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908625::NZ_JBIYDK010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span836462-838930Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH963_000866RefSeq proteinWP_044441415.1
Context group ID
GCF_044908625::NZ_JBIYDK010000001.1::G00010Context members
ABH963_RS04305ABH963_RS04310
Partner locus tags
ABH963_RS04305ABH963_RS04310
Partner old locus tags
ABH963_000865ABH963_000866
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044441415.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH963_RS04310Primary locus identifier stored in the genes table.
Old locus tagABH963_000866Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDK010000001.1Sequence record reported by the local genomic context database.
Genomic interval838 562-838 930 nt369 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span836 462-838 930 ntGCF_044908625::NZ_JBIYDK010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908625::NZ_JBIYDK010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span836 462-838 930 nt2 469 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
836 462 nt838 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH963_RS04305GCF_044908625#ABH963_RS04305
HKCheA
836 462-838 432 nt · Reverse (-)
ABH963_RS04310GCF_044908625#ABH963_RS04310
RRCheYCurrent focus
838 562-838 930 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000931375#SZ39_RS13075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2404202
Simplified PFAM architecture for RROC_2404202
PFAM domain coverage: 112 / 122 aa (91.8%)
1 aa122 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-116]
- Domain count: 1
- Matched identifier: RROC_2404202
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116
Cluster members and taxonomy
Representative gene: GCF_000931375#SZ39_RS13075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 292 · GCF_044908625
AssemblyASM4490862v1 · Contighaploid
Genome composition5 774 376 bp · 35,0% GCBacillus sp. RC55
Signal transduction countsGenes 141 · HK 75 · RR 66CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key