1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:1.68e-34:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH947_RS11085
Response regulator OmpR family
Bacillus sp. RC206 · GCF_044908515
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908515#ABH947_RS11085Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:6.71e-34:230:78:77- Raw architecture: Response_reg:6:1.68e-34:114:110:111#Trans_reg_C:153:6.71e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908515::NZ_JBIYDG010000003.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span371478-373931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH947_002202RefSeq proteinWP_088038106.1
Context group ID
GCF_044908515::NZ_JBIYDG010000003.1::G00034Context members
ABH947_RS11080ABH947_RS11085
Partner locus tags
ABH947_RS11080ABH947_RS11085
Partner old locus tags
ABH947_002201ABH947_002202
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_088038106.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH947_RS11085Primary locus identifier stored in the genes table.
Old locus tagABH947_002202Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDG010000003.1Sequence record reported by the local genomic context database.
Genomic interval373 230-373 931 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span371 478-373 931 ntGCF_044908515::NZ_JBIYDG010000003.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908515::NZ_JBIYDG010000003.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDG010000003.1All displayed genes belong to this local TCS context.
Neighborhood span371 478-373 931 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
371 478 nt373 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH947_RS11080GCF_044908515#ABH947_RS11080
HKClassic
371 478-373 220 nt · Reverse (-)
ABH947_RS11085GCF_044908515#ABH947_RS11085
RROmpRCurrent focus
373 230-373 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002118175#S2E19_RS10980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1087632
Simplified PFAM architecture for RROC_1087632
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1087632
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_002118175#S2E19_RS10980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 281 · GCF_044908515
AssemblyASM4490851v1 · Contighaploid
Genome composition5 311 967 bp · 35,5% GCBacillus sp. RC206
Signal transduction countsGenes 127 · HK 68 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key