1 Response_reg#1
4-116 aa · 113 aa · 56.5% of protein
Raw token
Response_reg:4:3.66e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH953_RS23190
Response regulator NarL family
Bacillus sp. RC236 · GCF_044908295
ClassRRTypeNarLLength200 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908295#ABH953_RS23190Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length200 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 200 aa (84.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa200 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
139-194 aa · 56 aa · 28.0% of protein
Raw token
HTH_LUXR:139:4.33e-20:194:56:58- Raw architecture: Response_reg:4:3.66e-27:116:113:111#HTH_LUXR:139:4.33e-20:194:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908295::NZ_JBIYDA010000012.1::G00062
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span150310-152039Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH953_004661RefSeq proteinWP_328070653.1
Context group ID
GCF_044908295::NZ_JBIYDA010000012.1::G00062Context members
ABH953_RS23185ABH953_RS23190
Partner locus tags
ABH953_RS23185ABH953_RS23190
Partner old locus tags
ABH953_004660ABH953_004661
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328070653.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH953_RS23190Primary locus identifier stored in the genes table.
Old locus tagABH953_004661Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDA010000012.1Sequence record reported by the local genomic context database.
Genomic interval151 437-152 039 nt603 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span150 310-152 039 ntGCF_044908295::NZ_JBIYDA010000012.1::G00062
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908295::NZ_JBIYDA010000012.1::G00062Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDA010000012.1All displayed genes belong to this local TCS context.
Neighborhood span150 310-152 039 nt1 730 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
150 310 nt152 039 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH953_RS23185GCF_044908295#ABH953_RS23185
HKClassic
150 310-151 440 nt · Forward (+)
ABH953_RS23190GCF_044908295#ABH953_RS23190
RRNarLCurrent focus
151 437-152 039 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036222645#P9452_RS20685Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2140965
Simplified PFAM architecture for RROC_2140965
PFAM domain coverage: 169 / 200 aa (84.5%)
1 aa200 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[139-194]
- Domain count: 2
- Matched identifier: RROC_2140965
- Positioned domains: Response_reg 4-116 ; GerE 139-194
Cluster members and taxonomy
Representative gene: GCF_036222645#P9452_RS20685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 284 · GCF_044908295
AssemblyASM4490829v1 · Contighaploid
Genome composition5 900 650 bp · 35,0% GCBacillus sp. RC236
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key