1 Response_reg#1
3-112 aa · 110 aa · 51.2% of protein
Raw token
Response_reg:3:5.25e-34:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH953_RS15465
Response regulator OmpR family
Bacillus sp. RC236 · GCF_044908295
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908295#ABH953_RS15465Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 215 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-210 aa · 71 aa · 33.0% of protein
Raw token
Trans_reg_C:140:3.71e-28:210:76:77- Raw architecture: Response_reg:3:5.25e-34:112:111:111#Trans_reg_C:140:3.71e-28:210:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908295::NZ_JBIYDA010000005.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span175846-177862Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH953_003108RefSeq proteinWP_078178995.1
Context group ID
GCF_044908295::NZ_JBIYDA010000005.1::G00033Context members
ABH953_RS15465ABH953_RS15470
Partner locus tags
ABH953_RS15465ABH953_RS15470
Partner old locus tags
ABH953_003108ABH953_003109
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_078178995.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH953_RS15465Primary locus identifier stored in the genes table.
Old locus tagABH953_003108Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDA010000005.1Sequence record reported by the local genomic context database.
Genomic interval175 846-176 493 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span175 846-177 862 ntGCF_044908295::NZ_JBIYDA010000005.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908295::NZ_JBIYDA010000005.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDA010000005.1All displayed genes belong to this local TCS context.
Neighborhood span175 846-177 862 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
175 846 nt177 862 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH953_RS15465GCF_044908295#ABH953_RS15465
RROmpRCurrent focus
175 846-176 493 nt · Forward (+)
ABH953_RS15470GCF_044908295#ABH953_RS15470
HKClassic
176 486-177 862 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014545#BW891_RS24240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1911248
Simplified PFAM architecture for RROC_1911248
PFAM domain coverage: 180 / 215 aa (83.7%)
1 aa215 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[140-210]
- Domain count: 2
- Matched identifier: RROC_1911248
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 140-210 ; Trans_reg_C 140-210
Cluster members and taxonomy
Representative gene: GCF_002014545#BW891_RS24240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 284 · GCF_044908295
AssemblyASM4490829v1 · Contighaploid
Genome composition5 900 650 bp · 35,0% GCBacillus sp. RC236
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key