1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:6.11e-27:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH953_RS00540
Response regulator OmpR family
Bacillus sp. RC236 · GCF_044908295
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908295#ABH953_RS00540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:147:1.28e-23:222:77:77- Raw architecture: Response_reg:4:6.11e-27:112:110:111#Trans_reg_C:147:1.28e-23:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908295::NZ_JBIYDA010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span94696-96386Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH953_000104RefSeq proteinWP_000720526.1
Context group ID
GCF_044908295::NZ_JBIYDA010000001.1::G00001Context members
ABH953_RS00535ABH953_RS00540
Partner locus tags
ABH953_RS00535ABH953_RS00540
Partner old locus tags
ABH953_000103ABH953_000104
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000720526.1Primary protein accession used for annex mappings.
UniProt accessionA0A1A9PSP4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1A9PSP4_9BACIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH953_RS00540Primary locus identifier stored in the genes table.
Old locus tagABH953_000104Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYDA010000001.1Sequence record reported by the local genomic context database.
Genomic interval95 715-96 386 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span94 696-96 386 ntGCF_044908295::NZ_JBIYDA010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908295::NZ_JBIYDA010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYDA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span94 696-96 386 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
94 696 nt96 386 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH953_RS00535GCF_044908295#ABH953_RS00535
HKClassic
94 696-95 718 nt · Reverse (-)
ABH953_RS00540GCF_044908295#ABH953_RS00540
RROmpRCurrent focus
95 715-96 386 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS09010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1586793
Simplified PFAM architecture for RROC_1586793
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1586793
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS09010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 284 · GCF_044908295
AssemblyASM4490829v1 · Contighaploid
Genome composition5 900 650 bp · 35,0% GCBacillus sp. RC236
Signal transduction countsGenes 139 · HK 75 · RR 64CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key