1 Response_reg#1
5-116 aa · 112 aa · 52.8% of protein
Raw token
Response_reg:5:1.52e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH957_RS07690
Response regulator NarL family
Bacillus sp. RC242 · GCF_044908245
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044908245#ABH957_RS07690Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 212 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
152-205 aa · 54 aa · 25.5% of protein
Raw token
HTH_LUXR:152:2.48e-18:205:54:58- Raw architecture: Response_reg:5:1.52e-28:116:113:111#HTH_LUXR:152:2.48e-18:205:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044908245::NZ_JBIYCZ010000003.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146076-147819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH957_001558RefSeq proteinWP_404510911.1
Context group ID
GCF_044908245::NZ_JBIYCZ010000003.1::G00017Context members
ABH957_RS07690ABH957_RS07695
Partner locus tags
ABH957_RS07690ABH957_RS07695
Partner old locus tags
ABH957_001558ABH957_001559
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404510911.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH957_RS07690Primary locus identifier stored in the genes table.
Old locus tagABH957_001558Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYCZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval146 076-146 714 nt639 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 076-147 819 ntGCF_044908245::NZ_JBIYCZ010000003.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044908245::NZ_JBIYCZ010000003.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYCZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span146 076-147 819 nt1 744 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 076 nt147 819 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ABH957_RS07690GCF_044908245#ABH957_RS07690
RRNarLCurrent focus
146 076-146 714 nt · Forward (+)
ABH957_RS07695GCF_044908245#ABH957_RS07695
HKClassic
146 719-147 819 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044908245#ABH957_RS07690The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2002295
Simplified PFAM architecture for RROC_2002295
PFAM domain coverage: 167 / 212 aa (78.8%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-116] | GerE[151-205]
- Domain count: 2
- Matched identifier: RROC_2002295
- Positioned domains: Response_reg 5-116 ; GerE 151-205
Cluster members and taxonomy
Representative gene: GCF_044908245#ABH957_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 286 · GCF_044908245
AssemblyASM4490824v1 · Contighaploid
Genome composition5 672 181 bp · 35,0% GCBacillus sp. RC242
Signal transduction countsGenes 123 · HK 66 · RR 57CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key