1 Response_reg#1
4-112 aa · 109 aa · 43.4% of protein
Raw token
Response_reg:4:2e-16:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ABH965_RS22745
Response regulator LytTR family
Bacillus sp. RC97 · GCF_044907985
ClassRRTypeLytTRLength251 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044907985#ABH965_RS22745Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 251 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-243 aa · 95 aa · 37.8% of protein
Raw token
LytTR:149:7.74e-23:243:100:98- Raw architecture: Response_reg:4:2e-16:112:109:111#LytTR:149:7.74e-23:243:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044907985::NZ_JBIYCQ010000009.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span204929-205684Genomic interval covered by the local TCS group.
Identifiers
Old locus tagABH965_004610RefSeq proteinWP_404468266.1
Context group ID
GCF_044907985::NZ_JBIYCQ010000009.1::G00058Context members
ABH965_RS22745
Partner locus tags
ABH965_RS22745
Partner old locus tags
ABH965_004610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_404468266.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagABH965_RS22745Primary locus identifier stored in the genes table.
Old locus tagABH965_004610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBIYCQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval204 929-205 684 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span204 929-205 684 ntGCF_044907985::NZ_JBIYCQ010000009.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044907985::NZ_JBIYCQ010000009.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBIYCQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span204 929-205 684 nt756 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 929 nt205 684 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ABH965_RS22745GCF_044907985#ABH965_RS22745
RRLytTRCurrent focus
204 929-205 684 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044907985#ABH965_RS22745The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0720883
Simplified PFAM architecture for RROC_0720883
PFAM domain coverage: 202 / 251 aa (80.5%)
1 aa251 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-112] | LytTR[150-242]
- Domain count: 2
- Matched identifier: RROC_0720883
- Positioned domains: Response_reg 4-112 ; LytTR 150-242
Cluster members and taxonomy
Representative gene: GCF_044907985#ABH965_RS22745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 3 156 294 · GCF_044907985
AssemblyASM4490798v1 · Contighaploid
Genome composition5 809 416 bp · 35,0% GCBacillus sp. RC97
Signal transduction countsGenes 140 · HK 75 · RR 65CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key