1 HAMP#1
91-169 aa · 79 aa · 19.8% of protein
Raw token
HAMP:91:0.000000468:169:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS12955
Histidine kinase, Classic
[Ruminococcus] torques · GCF_044591705
ClassHKTypeClassicLength400 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044591705#ACH9UM_RS12955Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length400 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 400 aa (63.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa400 aa
Domain-by-domain annotation3 items
2 HisKA#2
182-251 aa · 70 aa · 17.5% of protein
Raw token
HisKA:182:0.00000000221:251:70:643 HATPase_c#3
296-399 aa · 104 aa · 26.0% of protein
Raw token
HATPase_c:296:2.28e-21:399:106:109- Raw architecture: HAMP:91:0.000000468:169:79:69#HisKA:182:0.00000000221:251:70:64#HATPase_c:296:2.28e-21:399:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044591705::NZ_CP172594.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2795960-2797830Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_12955RefSeq proteinWP_302013578.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00034Context members
ACH9UM_RS12955ACH9UM_RS12960
Partner locus tags
ACH9UM_RS12955ACH9UM_RS12960
Partner old locus tags
ACH9UM_12955ACH9UM_12960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_302013578.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS12955Primary locus identifier stored in the genes table.
Old locus tagACH9UM_12955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval2 795 960-2 797 162 nt1 203 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 795 960-2 797 830 ntGCF_044591705::NZ_CP172594.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span2 795 960-2 797 830 nt1 871 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 795 960 nt2 797 830 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH9UM_RS12955GCF_044591705#ACH9UM_RS12955
HKClassicCurrent focus
2 795 960-2 797 162 nt · Reverse (-)
ACH9UM_RS12960GCF_044591705#ACH9UM_RS12960
RROmpR
2 797 150-2 797 830 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_037247945#WIH66_RS06190Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2447456
Simplified PFAM architecture for HKOC_2447456
PFAM domain coverage: 214 / 400 aa (53.5%)
1 aa400 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[127-169] | HisKA[183-250] | HATPase_c[297-399]
- Domain count: 3
- Matched identifier: HKOC_2447456
- Positioned domains: HAMP 127-169 ; HisKA 183-250 ; HATPase_c 297-399
Cluster members and taxonomy
Representative gene: GCF_037247945#WIH66_RS06190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key