1 HisKA#1
657-722 aa · 66 aa · 7.5% of protein
Raw token
HisKA:657:0.000000000000073:722:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS12635
Histidine kinase, Classic
[Ruminococcus] torques · GCF_044591705
ClassHKTypeClassicLength879 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044591705#ACH9UM_RS12635Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length879 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 879 aa (18.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa879 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
769-860 aa · 92 aa · 10.5% of protein
Raw token
HATPase_c:769:0.000000000129:860:96:109- Raw architecture: HisKA:657:0.000000000000073:722:66:64#HATPase_c:769:0.000000000129:860:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044591705::NZ_CP172594.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2706502-2709871Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_12635RefSeq proteinWP_288558492.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00033Context members
ACH9UM_RS12635ACH9UM_RS12640
Partner locus tags
ACH9UM_RS12635ACH9UM_RS12640
Partner old locus tags
ACH9UM_12635ACH9UM_12640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_288558492.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS12635Primary locus identifier stored in the genes table.
Old locus tagACH9UM_12635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval2 706 502-2 709 141 nt2 640 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 706 502-2 709 871 ntGCF_044591705::NZ_CP172594.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span2 706 502-2 709 871 nt3 370 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 706 502 nt2 709 871 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH9UM_RS12635GCF_044591705#ACH9UM_RS12635
HKClassicCurrent focus
2 706 502-2 709 141 nt · Reverse (-)
ACH9UM_RS12640GCF_044591705#ACH9UM_RS12640
RROmpR
2 709 173-2 709 871 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044591705#ACH9UM_RS12635The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0449062
Simplified PFAM architecture for HKOC_0449062
PFAM domain coverage: 154 / 879 aa (17.5%)
1 aa879 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[657-722] | HATPase_c[769-856]
- Domain count: 2
- Matched identifier: HKOC_0449062
- Positioned domains: HisKA 657-722 ; HATPase_c 769-856
Cluster members and taxonomy
Representative gene: GCF_044591705#ACH9UM_RS12635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key