1 HAMP#1
171-240 aa · 70 aa · 15.0% of protein
Raw token
HAMP:171:0.00000000000965:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS12480
Histidine kinase, Classic
[Ruminococcus] torques · GCF_044591705
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044591705#ACH9UM_RS12480Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 468 aa (51.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.0000000000000797:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:2.4e-31:464:109:109- Raw architecture: HAMP:171:0.00000000000965:240:70:69#HisKA:245:0.0000000000000797:304:60:64#HATPase_c:356:2.4e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044591705::NZ_CP172594.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2672229-2674361Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_12480RefSeq proteinWP_004848327.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00032Context members
ACH9UM_RS12475ACH9UM_RS12480
Partner locus tags
ACH9UM_RS12475ACH9UM_RS12480
Partner old locus tags
ACH9UM_12475ACH9UM_12480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004848327.1Primary protein accession used for annex mappings.
UniProt accessionA5KN63Primary UniProt accession resolved in the annex database.
UniProt IDA5KN63_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS12480Primary locus identifier stored in the genes table.
Old locus tagACH9UM_12480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval2 672 955-2 674 361 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 672 229-2 674 361 ntGCF_044591705::NZ_CP172594.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span2 672 229-2 674 361 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 672 229 nt2 674 361 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH9UM_RS12475GCF_044591705#ACH9UM_RS12475
RROmpR
2 672 229-2 672 930 nt · Forward (+)
ACH9UM_RS12480GCF_044591705#ACH9UM_RS12480
HKClassicCurrent focus
2 672 955-2 674 361 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS12015Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737640
Simplified PFAM architecture for HKOC_1737640
PFAM domain coverage: 218 / 468 aa (46.6%)
1 aa468 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-239] | HisKA[246-307] | HATPase_c[357-465]
- Domain count: 3
- Matched identifier: HKOC_1737640
- Positioned domains: HAMP 193-239 ; HisKA 246-307 ; HATPase_c 357-465
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS12015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key