1 HAMP#1
326-394 aa · 69 aa · 11.2% of protein
Raw token
HAMP:326:0.000000001:394:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS12045
Histidine kinase, Classic
[Ruminococcus] torques · GCF_044591705
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044591705#ACH9UM_RS12045Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage255 / 618 aa (41.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa618 aa
Domain-by-domain annotation3 items
2 His_kinase#2
409-489 aa · 81 aa · 13.1% of protein
Raw token
His_kinase:409:7.43e-29:489:81:803 HATPase_c#3
509-613 aa · 105 aa · 17.0% of protein
Raw token
HATPase_c:509:0.00000000201:613:109:109- Raw architecture: HAMP:326:0.000000001:394:69:69#His_kinase:409:7.43e-29:489:81:80#HATPase_c:509:0.00000000201:613:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044591705::NZ_CP172594.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2566023-2569341Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_12045RefSeq proteinWP_400091452.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00030Context members
ACH9UM_RS12040ACH9UM_RS12045
Partner locus tags
ACH9UM_RS12040ACH9UM_RS12045
Partner old locus tags
ACH9UM_12040ACH9UM_12045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_400091452.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS12045Primary locus identifier stored in the genes table.
Old locus tagACH9UM_12045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval2 567 485-2 569 341 nt1 857 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 566 023-2 569 341 ntGCF_044591705::NZ_CP172594.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span2 566 023-2 569 341 nt3 319 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 566 023 nt2 569 341 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH9UM_RS12040GCF_044591705#ACH9UM_RS12040
RRunclassified
2 566 023-2 567 492 nt · Reverse (-)
ACH9UM_RS12045GCF_044591705#ACH9UM_RS12045
HKClassicCurrent focus
2 567 485-2 569 341 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_044591705#ACH9UM_RS12045The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0981505
Simplified PFAM architecture for HKOC_0981505
PFAM domain coverage: 229 / 618 aa (37.1%)
1 aa618 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[351-394] | His_kinase[409-489] | HATPase_c[509-612]
- Domain count: 3
- Matched identifier: HKOC_0981505
- Positioned domains: HAMP 351-394 ; His_kinase 409-489 ; HATPase_c 509-612
Cluster members and taxonomy
Representative gene: GCF_044591705#ACH9UM_RS12045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key