1 Response_reg#1
3-115 aa · 113 aa · 51.6% of protein
Raw token
Response_reg:3:1.46e-17:115:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS09990
Response regulator LytTR family
[Ruminococcus] torques · GCF_044591705
ClassRRTypeLytTRLength219 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044591705#ACH9UM_RS09990Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage190 / 219 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-219 aa · 77 aa · 35.2% of protein
Raw token
LytTR:143:4.44e-21:219:82:98- Raw architecture: Response_reg:3:1.46e-17:115:116:111#LytTR:143:4.44e-21:219:82:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044591705::NZ_CP172594.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2105463-2106122Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_09990RefSeq proteinWP_004847076.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00025Context members
ACH9UM_RS09990
Partner locus tags
ACH9UM_RS09990
Partner old locus tags
ACH9UM_09990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004847076.1Primary protein accession used for annex mappings.
UniProt accessionA5KNL4Primary UniProt accession resolved in the annex database.
UniProt IDA5KNL4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS09990Primary locus identifier stored in the genes table.
Old locus tagACH9UM_09990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval2 105 463-2 106 122 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 105 463-2 106 122 ntGCF_044591705::NZ_CP172594.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span2 105 463-2 106 122 nt660 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 105 463 nt2 106 122 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACH9UM_RS09990GCF_044591705#ACH9UM_RS09990
RRLytTRCurrent focus
2 105 463-2 106 122 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022132465#L0N16_RS12740Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0948608
Simplified PFAM architecture for RROC_0948608
PFAM domain coverage: 196 / 238 aa (82.4%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[142-226]
- Domain count: 2
- Matched identifier: RROC_0948608
- Positioned domains: Response_reg 3-113 ; LytTR 142-226
Cluster members and taxonomy
Representative gene: GCF_022132465#L0N16_RS12740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key