1 Response_reg#1
6-121 aa · 116 aa · 44.1% of protein
Raw token
Response_reg:6:1.14e-19:121:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS04865
Response regulator Spo0A family
[Ruminococcus] torques · GCF_044591705
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_044591705#ACH9UM_RS04865Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 263 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
152-255 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:152:1.83e-65:255:104:104- Raw architecture: Response_reg:6:1.14e-19:121:117:111#Spo0A_C:152:1.83e-65:255:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_044591705::NZ_CP172594.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1064110-1064901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_04865RefSeq proteinWP_004844940.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00011Context members
ACH9UM_RS04865
Partner locus tags
ACH9UM_RS04865
Partner old locus tags
ACH9UM_04865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844940.1Primary protein accession used for annex mappings.
UniProt accessionA5KL23Primary UniProt accession resolved in the annex database.
UniProt IDA5KL23_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS04865Primary locus identifier stored in the genes table.
Old locus tagACH9UM_04865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval1 064 110-1 064 901 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 064 110-1 064 901 ntGCF_044591705::NZ_CP172594.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span1 064 110-1 064 901 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 064 110 nt1 064 901 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACH9UM_RS04865GCF_044591705#ACH9UM_RS04865
RRSpo0ACurrent focus
1 064 110-1 064 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS00170Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639434
Simplified PFAM architecture for RROC_0639434
PFAM domain coverage: 219 / 263 aa (83.3%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[152-255]
- Domain count: 2
- Matched identifier: RROC_0639434
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 152-255 ; Spo0A_C 152-255
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS00170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key