1 HAMP#1
87-154 aa · 68 aa · 17.8% of protein
Raw token
HAMP:87:0.0000000205:154:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH9UM_RS04730
Histidine kinase, Classic
[Ruminococcus] torques · GCF_044591705
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_044591705#ACH9UM_RS04730Stable P2CS identifier used across views.
GenomeGCF_044591705Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 382 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
158-224 aa · 67 aa · 17.5% of protein
Raw token
HisKA:158:0.000000000000111:224:67:643 HATPase_c#3
265-375 aa · 111 aa · 29.1% of protein
Raw token
HATPase_c:265:3.66e-31:375:111:109- Raw architecture: HAMP:87:0.0000000205:154:68:69#HisKA:158:0.000000000000111:224:67:64#HATPase_c:265:3.66e-31:375:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_044591705::NZ_CP172594.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1027362-1029181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACH9UM_04730RefSeq proteinWP_055159351.1
Context group ID
GCF_044591705::NZ_CP172594.1::G00010Context members
ACH9UM_RS04725ACH9UM_RS04730
Partner locus tags
ACH9UM_RS04725ACH9UM_RS04730
Partner old locus tags
ACH9UM_04725ACH9UM_04730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055159351.1Primary protein accession used for annex mappings.
UniProt accessionA0A174EQR2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174EQR2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH9UM_RS04730Primary locus identifier stored in the genes table.
Old locus tagACH9UM_04730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP172594.1Sequence record reported by the local genomic context database.
Genomic interval1 028 033-1 029 181 nt1 149 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 027 362-1 029 181 ntGCF_044591705::NZ_CP172594.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_044591705::NZ_CP172594.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP172594.1All displayed genes belong to this local TCS context.
Neighborhood span1 027 362-1 029 181 nt1 820 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 027 362 nt1 029 181 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH9UM_RS04725GCF_044591705#ACH9UM_RS04725
RROmpR
1 027 362-1 028 036 nt · Forward (+)
ACH9UM_RS04730GCF_044591705#ACH9UM_RS04730
HKClassicCurrent focus
1 028 033-1 029 181 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022132465#L0N16_RS12190Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2594505
Simplified PFAM architecture for HKOC_2594505
PFAM domain coverage: 174 / 382 aa (45.5%)
1 aa382 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[158-222] | HATPase_c[268-376]
- Domain count: 2
- Matched identifier: HKOC_2594505
- Positioned domains: HisKA 158-222 ; HATPase_c 268-376
Cluster members and taxonomy
Representative gene: GCF_022132465#L0N16_RS12190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_044591705
AssemblyASM4459170v1 · Complete Genomereference genome · haploid
Genome composition2 979 783 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 57 · HK 26 · RR 30CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key