1 HisKA#1
82-144 aa · 63 aa · 20.9% of protein
Raw token
HisKA:82:0.0000000781:144:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0SW_RS10430
Histidine kinase, Classic
Clostridioides difficile · GCF_043846145
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_043846145#ACH0SW_RS10430Stable P2CS identifier used across views.
GenomeGCF_043846145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 302 aa (54.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-295 aa · 100 aa · 33.1% of protein
Raw token
HATPase_c:196:1.08e-22:295:100:109- Raw architecture: HisKA:82:0.0000000781:144:63:64#HATPase_c:196:1.08e-22:295:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_043846145::NZ_JBAMHE010000004.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span361408-362989Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043846145::NZ_JBAMHE010000004.1::G00029Context members
ACH0SW_RS10430ACH0SW_RS10435
Partner locus tags
ACH0SW_RS10430ACH0SW_RS10435
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_394869990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0SW_RS10430Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMHE010000004.1Sequence record reported by the local genomic context database.
Genomic interval361 408-362 316 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span361 408-362 989 ntGCF_043846145::NZ_JBAMHE010000004.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043846145::NZ_JBAMHE010000004.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMHE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span361 408-362 989 nt1 582 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
361 408 nt362 989 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH0SW_RS10430GCF_043846145#ACH0SW_RS10430
HKClassicCurrent focus
361 408-362 316 nt · Reverse (-)
ACH0SW_RS10435GCF_043846145#ACH0SW_RS10435
RROmpR
362 318-362 989 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_043846145#ACH0SW_RS10430The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2885600
Simplified PFAM architecture for HKOC_2885600
PFAM domain coverage: 166 / 302 aa (55.0%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[81-144] | HATPase_c[195-296]
- Domain count: 2
- Matched identifier: HKOC_2885600
- Positioned domains: HisKA 81-144 ; HATPase_c 195-296
Cluster members and taxonomy
Representative gene: GCF_043846145#ACH0SW_RS10430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_043846145
AssemblyASM4384614v1 · Scaffoldhaploid
Genome composition4 166 487 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 48 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key