1 HisKA#1
148-211 aa · 64 aa · 17.3% of protein
Raw token
HisKA:148:0.0000000000000866:211:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0SW_RS00940
Histidine kinase, Classic
Clostridioides difficile · GCF_043846145
ClassHKTypeClassicLength371 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_043846145#ACH0SW_RS00940Stable P2CS identifier used across views.
GenomeGCF_043846145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length371 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 371 aa (46.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa371 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
260-368 aa · 109 aa · 29.4% of protein
Raw token
HATPase_c:260:3.94e-25:368:110:109- Raw architecture: HisKA:148:0.0000000000000866:211:64:64#HATPase_c:260:3.94e-25:368:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_043846145::NZ_JBAMHE010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span178910-180759Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043846145::NZ_JBAMHE010000001.1::G00004Context members
ACH0SW_RS00935ACH0SW_RS00940
Partner locus tags
ACH0SW_RS00935ACH0SW_RS00940
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_077704625.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0SW_RS00940Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMHE010000001.1Sequence record reported by the local genomic context database.
Genomic interval179 644-180 759 nt1 116 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span178 910-180 759 ntGCF_043846145::NZ_JBAMHE010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043846145::NZ_JBAMHE010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMHE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span178 910-180 759 nt1 850 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 910 nt180 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH0SW_RS00935GCF_043846145#ACH0SW_RS00935
RROmpR
178 910-179 608 nt · Forward (+)
ACH0SW_RS00940GCF_043846145#ACH0SW_RS00940
HKClassicCurrent focus
179 644-180 759 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004317765#E0Q98_RS18530Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2677665
Simplified PFAM architecture for HKOC_2677665
PFAM domain coverage: 174 / 371 aa (46.9%)
1 aa371 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[149-213] | HATPase_c[261-369]
- Domain count: 2
- Matched identifier: HKOC_2677665
- Positioned domains: HisKA 149-213 ; HATPase_c 261-369
Cluster members and taxonomy
Representative gene: GCF_004317765#E0Q98_RS18530
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 8 over 8 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_043846145
AssemblyASM4384614v1 · Scaffoldhaploid
Genome composition4 166 487 bp · 28,0% GCClostridioides difficile
Signal transduction countsGenes 98 · HK 48 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key