1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:9.38e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACH0RF_RS07950
Response regulator OmpR family
Clostridioides difficile · GCF_043845185
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_043845185#ACH0RF_RS07950Stable P2CS identifier used across views.
GenomeGCF_043845185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 223 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:148:3.77e-31:219:77:77- Raw architecture: Response_reg:5:9.38e-32:114:111:111#Trans_reg_C:148:3.77e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_043845185::NZ_JBAMGH010000004.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184118-186152Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_043845185::NZ_JBAMGH010000004.1::G00025Context members
ACH0RF_RS07945ACH0RF_RS07950
Partner locus tags
ACH0RF_RS07945ACH0RF_RS07950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004614923.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35UU78Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35UU78_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACH0RF_RS07950Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JBAMGH010000004.1Sequence record reported by the local genomic context database.
Genomic interval185 481-186 152 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 118-186 152 ntGCF_043845185::NZ_JBAMGH010000004.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043845185::NZ_JBAMGH010000004.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBAMGH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span184 118-186 152 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 118 nt186 152 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACH0RF_RS07945GCF_043845185#ACH0RF_RS07945
HKClassic
184 118-185 203 nt · Reverse (-)
ACH0RF_RS07950GCF_043845185#ACH0RF_RS07950
RROmpRCurrent focus
185 481-186 152 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002838265#NRBB02_RS02380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1598170
Simplified PFAM architecture for RROC_1598170
PFAM domain coverage: 180 / 223 aa (80.7%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1598170
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_002838265#NRBB02_RS02380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_043845185
AssemblyASM4384518v1 · Scaffoldhaploid
Genome composition4 360 383 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 49 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key