1 Response_reg#1
3-114 aa · 112 aa · 48.1% of protein
Raw token
Response_reg:3:6.46e-16:114:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACGAKC_RS18420
Response regulator LytTR family
Clostridioides difficile · GCF_043107495
ClassRRTypeLytTRLength233 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_043107495#ACGAKC_RS18420Stable P2CS identifier used across views.
GenomeGCF_043107495Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 233 aa (85.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-223 aa · 87 aa · 37.3% of protein
Raw token
LytTR:137:1.34e-19:223:92:98- Raw architecture: Response_reg:3:6.46e-16:114:118:111#LytTR:137:1.34e-19:223:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_043107495::NZ_JBICPD010000039.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span5695-6396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACGAKC_18420RefSeq proteinWP_085059770.1
Context group ID
GCF_043107495::NZ_JBICPD010000039.1::G00036Context members
ACGAKC_RS18420
Partner locus tags
ACGAKC_RS18420
Partner old locus tags
ACGAKC_18420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_085059770.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACGAKC_RS18420Primary locus identifier stored in the genes table.
Old locus tagACGAKC_18420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBICPD010000039.1Sequence record reported by the local genomic context database.
Genomic interval5 695-6 396 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 695-6 396 ntGCF_043107495::NZ_JBICPD010000039.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_043107495::NZ_JBICPD010000039.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBICPD010000039.1All displayed genes belong to this local TCS context.
Neighborhood span5 695-6 396 nt702 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 695 nt6 396 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACGAKC_RS18420GCF_043107495#ACGAKC_RS18420
RRLytTRCurrent focus
5 695-6 396 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_043107495#ACGAKC_RS18420The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1114454
Simplified PFAM architecture for RROC_1114454
PFAM domain coverage: 199 / 233 aa (85.4%)
1 aa233 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-113] | LytTR[135-222]
- Domain count: 2
- Matched identifier: RROC_1114454
- Positioned domains: Response_reg 3-113 ; LytTR 135-222
Cluster members and taxonomy
Representative gene: GCF_043107495#ACGAKC_RS18420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_043107495
AssemblyASM4310749v1 · Contighaploid
Genome composition4 044 802 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 94 · HK 42 · RR 50CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key