1 HAMP#1
167-235 aa · 69 aa · 14.5% of protein
Raw token
HAMP:167:0.000000000000279:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS25545
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS25545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 476 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
247-304 aa · 58 aa · 12.2% of protein
Raw token
HisKA:247:0.00000000000461:304:58:643 HATPase_c#3
356-464 aa · 109 aa · 22.9% of protein
Raw token
HATPase_c:356:1.38e-21:464:109:109- Raw architecture: HAMP:167:0.000000000000279:235:69:69#HisKA:247:0.00000000000461:304:58:64#HATPase_c:356:1.38e-21:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000037.1::G00070
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15652-17765Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_25545RefSeq proteinWP_002184614.1
Context group ID
GCF_042884815::NZ_JBHVTE010000037.1::G00070Context members
ACFVT4_RS25540ACFVT4_RS25545
Partner locus tags
ACFVT4_RS25540ACFVT4_RS25545
Partner old locus tags
ACFVT4_25540ACFVT4_25545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002184614.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX6Z7B1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX6Z7B1_BACMYDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS25545Primary locus identifier stored in the genes table.
Old locus tagACFVT4_25545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000037.1Sequence record reported by the local genomic context database.
Genomic interval16 335-17 765 nt1 431 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 652-17 765 ntGCF_042884815::NZ_JBHVTE010000037.1::G00070
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000037.1::G00070Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000037.1All displayed genes belong to this local TCS context.
Neighborhood span15 652-17 765 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 652 nt17 765 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS25540GCF_042884815#ACFVT4_RS25540
RROmpR
15 652-16 323 nt · Forward (+)
ACFVT4_RS25545GCF_042884815#ACFVT4_RS25545
HKClassicCurrent focus
16 335-17 765 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS25320Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1654772
Simplified PFAM architecture for HKOC_1654772
PFAM domain coverage: 218 / 476 aa (45.8%)
1 aa476 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[248-308] | HATPase_c[358-462]
- Domain count: 3
- Matched identifier: HKOC_1654772
- Positioned domains: HAMP 184-235 ; HisKA 248-308 ; HATPase_c 358-462
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS25320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key