1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.99e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS24990
Response regulator OmpR family
Bacillus mycoides · GCF_042884815
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS24990Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:155:1.99e-25:225:72:77- Raw architecture: Response_reg:4:1.99e-25:113:111:111#Trans_reg_C:155:1.99e-25:225:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000035.1::G00068
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44584-46277Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_24990RefSeq proteinWP_016120219.1
Context group ID
GCF_042884815::NZ_JBHVTE010000035.1::G00068Context members
ACFVT4_RS24990ACFVT4_RS24995
Partner locus tags
ACFVT4_RS24990ACFVT4_RS24995
Partner old locus tags
ACFVT4_24990ACFVT4_24995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120219.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8KSA8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8KSA8_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS24990Primary locus identifier stored in the genes table.
Old locus tagACFVT4_24990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000035.1Sequence record reported by the local genomic context database.
Genomic interval44 584-45 288 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 584-46 277 ntGCF_042884815::NZ_JBHVTE010000035.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000035.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000035.1All displayed genes belong to this local TCS context.
Neighborhood span44 584-46 277 nt1 694 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 584 nt46 277 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS24990GCF_042884815#ACFVT4_RS24990
RROmpRCurrent focus
44 584-45 288 nt · Forward (+)
ACFVT4_RS24995GCF_042884815#ACFVT4_RS24995
HKClassic
45 291-46 277 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS10930Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1048741
Simplified PFAM architecture for RROC_1048741
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1048741
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS10930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key