1 HAMP#1
218-287 aa · 70 aa · 13.0% of protein
Raw token
HAMP:218:0.00000000000000127:287:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS20685
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength537 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS20685Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length537 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 537 aa (46.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa537 aa
Domain-by-domain annotation3 items
2 HisKA#2
312-377 aa · 66 aa · 12.3% of protein
Raw token
HisKA:312:0.00000000000014:377:66:643 HATPase_c#3
423-536 aa · 114 aa · 21.2% of protein
Raw token
HATPase_c:423:4.92e-16:536:116:109- Raw architecture: HAMP:218:0.00000000000000127:287:70:69#HisKA:312:0.00000000000014:377:66:64#HATPase_c:423:4.92e-16:536:116:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000025.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span33730-36043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_20685RefSeq proteinWP_390220104.1
Context group ID
GCF_042884815::NZ_JBHVTE010000025.1::G00056Context members
ACFVT4_RS20680ACFVT4_RS20685
Partner locus tags
ACFVT4_RS20680ACFVT4_RS20685
Partner old locus tags
ACFVT4_20680ACFVT4_20685
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390220104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS20685Primary locus identifier stored in the genes table.
Old locus tagACFVT4_20685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000025.1Sequence record reported by the local genomic context database.
Genomic interval34 430-36 043 nt1 614 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 730-36 043 ntGCF_042884815::NZ_JBHVTE010000025.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000025.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000025.1All displayed genes belong to this local TCS context.
Neighborhood span33 730-36 043 nt2 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 730 nt36 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS20680GCF_042884815#ACFVT4_RS20680
RROmpR
33 730-34 416 nt · Forward (+)
ACFVT4_RS20685GCF_042884815#ACFVT4_RS20685
HKClassicCurrent focus
34 430-36 043 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042884815#ACFVT4_RS20685The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1333419
Simplified PFAM architecture for HKOC_1333419
PFAM domain coverage: 227 / 537 aa (42.3%)
1 aa537 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[236-287] | HisKA[313-377] | HATPase_c[426-535]
- Domain count: 3
- Matched identifier: HKOC_1333419
- Positioned domains: HAMP 236-287 ; HisKA 313-377 ; HATPase_c 426-535
Cluster members and taxonomy
Representative gene: GCF_042884815#ACFVT4_RS20685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key