1 HisKA#1
121-175 aa · 55 aa · 16.2% of protein
Raw token
HisKA:121:0.000000674:175:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS15390
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength340 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS15390Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length340 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 340 aa (48.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa340 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-330 aa · 110 aa · 32.4% of protein
Raw token
HATPase_c:221:4.04e-21:330:110:109- Raw architecture: HisKA:121:0.000000674:175:61:64#HATPase_c:221:4.04e-21:330:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000016.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1515-3205Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_15390RefSeq proteinWP_390219573.1
Context group ID
GCF_042884815::NZ_JBHVTE010000016.1::G00043Context members
ACFVT4_RS15390ACFVT4_RS15395
Partner locus tags
ACFVT4_RS15390ACFVT4_RS15395
Partner old locus tags
ACFVT4_15390ACFVT4_15395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390219573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS15390Primary locus identifier stored in the genes table.
Old locus tagACFVT4_15390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000016.1Sequence record reported by the local genomic context database.
Genomic interval1 515-2 537 nt1 023 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 515-3 205 ntGCF_042884815::NZ_JBHVTE010000016.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000016.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000016.1All displayed genes belong to this local TCS context.
Neighborhood span1 515-3 205 nt1 691 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 515 nt3 205 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS15390GCF_042884815#ACFVT4_RS15390
HKClassicCurrent focus
1 515-2 537 nt · Reverse (-)
ACFVT4_RS15395GCF_042884815#ACFVT4_RS15395
RROmpR
2 534-3 205 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042884815#ACFVT4_RS15390The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2839227
Simplified PFAM architecture for HKOC_2839227
PFAM domain coverage: 111 / 340 aa (32.6%)
1 aa340 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-331]
- Domain count: 1
- Matched identifier: HKOC_2839227
- Positioned domains: HATPase_c 221-331
Cluster members and taxonomy
Representative gene: GCF_042884815#ACFVT4_RS15390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key