1 PAS_4#1
234-310 aa · 77 aa · 9.6% of protein
Raw token
PAS_4:234:0.0000015:310:81:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS14945
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength801 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042884815#ACFVT4_RS14945Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PAS_4PAS_9HisKAHATPase_c
Protein length801 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage448 / 801 aa (55.9%)Merged over positioned domains only.
Domain description2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa801 aa
Domain-by-domain annotation5 items
2 PAS_4#2
332-437 aa · 106 aa · 13.2% of protein
Raw token
PAS_4:332:5.57e-18:437:107:1103 PAS_9#3
467-569 aa · 103 aa · 12.9% of protein
Raw token
PAS_9:467:0.00000000056:569:105:1024 HisKA#4
587-647 aa · 61 aa · 7.6% of protein
Raw token
HisKA:587:0.000000000000978:647:61:645 HATPase_c#5
695-795 aa · 101 aa · 12.6% of protein
Raw token
HATPase_c:695:4.05e-26:795:104:109- Raw architecture: PAS_4:234:0.0000015:310:81:110#PAS_4:332:5.57e-18:437:107:110#PAS_9:467:0.00000000056:569:105:102#HisKA:587:0.000000000000978:647:61:64#HATPase_c:695:4.05e-26:795:104:109
- Domain description: 2 PAS_4,1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042884815::NZ_JBHVTE010000015.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span31345-33750Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_14945RefSeq proteinWP_078178957.1
Context group ID
GCF_042884815::NZ_JBHVTE010000015.1::G00038Context members
ACFVT4_RS14945
Partner locus tags
ACFVT4_RS14945
Partner old locus tags
ACFVT4_14945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_078178957.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8H0G8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8H0G8_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS14945Primary locus identifier stored in the genes table.
Old locus tagACFVT4_14945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000015.1Sequence record reported by the local genomic context database.
Genomic interval31 345-33 750 nt2 406 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 345-33 750 ntGCF_042884815::NZ_JBHVTE010000015.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000015.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000015.1All displayed genes belong to this local TCS context.
Neighborhood span31 345-33 750 nt2 406 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 345 nt33 750 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFVT4_RS14945GCF_042884815#ACFVT4_RS14945
HKClassicCurrent focus
31 345-33 750 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014545#BW891_RS23595Use this link to inspect the representative gene detail.
PFAM architecturePAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0554519
Simplified PFAM architecture for HKOC_0554519
PFAM domain coverage: 449 / 801 aa (56.1%)
1 aa801 aa
PAS_4PAS_4PAS_9HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_4 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_4[230-310] | PAS_4[331-437] | PAS_9[472-569] | HisKA[587-646] | HATPase_c[694-796]
- Domain count: 5
- Matched identifier: HKOC_0554519
- Positioned domains: PAS_4 230-310 ; PAS_4 331-437 ; PAS_9 472-569 ; HisKA 587-646 ; HATPase_c 694-796
Cluster members and taxonomy
Representative gene: GCF_002014545#BW891_RS23595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key