1 HAMP#1
311-378 aa · 68 aa · 11.0% of protein
Raw token
HAMP:311:0.0000000000000293:378:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS12395
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS12395Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 617 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 HisKA#2
398-462 aa · 65 aa · 10.5% of protein
Raw token
HisKA:398:0.0000000000000129:462:65:643 HATPase_c#3
506-616 aa · 111 aa · 18.0% of protein
Raw token
HATPase_c:506:6.87e-23:616:113:109- Raw architecture: HAMP:311:0.0000000000000293:378:68:69#HisKA:398:0.0000000000000129:462:65:64#HATPase_c:506:6.87e-23:616:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000011.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span72562-75101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_12395RefSeq proteinWP_016127561.1
Context group ID
GCF_042884815::NZ_JBHVTE010000011.1::G00033Context members
ACFVT4_RS12390ACFVT4_RS12395
Partner locus tags
ACFVT4_RS12390ACFVT4_RS12395
Partner old locus tags
ACFVT4_12390ACFVT4_12395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016127561.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS12395Primary locus identifier stored in the genes table.
Old locus tagACFVT4_12395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000011.1Sequence record reported by the local genomic context database.
Genomic interval73 248-75 101 nt1 854 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span72 562-75 101 ntGCF_042884815::NZ_JBHVTE010000011.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000011.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000011.1All displayed genes belong to this local TCS context.
Neighborhood span72 562-75 101 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 562 nt75 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS12390GCF_042884815#ACFVT4_RS12390
RROmpR
72 562-73 251 nt · Forward (+)
ACFVT4_RS12395GCF_042884815#ACFVT4_RS12395
HKClassicCurrent focus
73 248-75 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399045#IKK_RS22665Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0982071
Simplified PFAM architecture for HKOC_0982071
PFAM domain coverage: 226 / 617 aa (36.6%)
1 aa617 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[329-378] | HisKA[398-462] | HATPase_c[506-616]
- Domain count: 3
- Matched identifier: HKOC_0982071
- Positioned domains: HAMP 329-378 ; HisKA 398-462 ; HATPase_c 506-616
Cluster members and taxonomy
Representative gene: GCF_000399045#IKK_RS22665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key