1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000479:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS05850
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042884815#ACFVT4_RS05850Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 472 aa (52.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.4% of protein
Raw token
HisKA:245:1.91e-16:312:68:643 HATPase_c#3
362-470 aa · 109 aa · 23.1% of protein
Raw token
HATPase_c:362:4.47e-27:470:109:109- Raw architecture: HAMP:171:0.000000000479:241:71:69#HisKA:245:1.91e-16:312:68:64#HATPase_c:362:4.47e-27:470:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042884815::NZ_JBHVTE010000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61391-63480Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_05850RefSeq proteinWP_033729364.1
Context group ID
GCF_042884815::NZ_JBHVTE010000004.1::G00016Context members
ACFVT4_RS05845ACFVT4_RS05850
Partner locus tags
ACFVT4_RS05845ACFVT4_RS05850
Partner old locus tags
ACFVT4_05845ACFVT4_05850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033729364.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8GUI5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8GUI5_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS05850Primary locus identifier stored in the genes table.
Old locus tagACFVT4_05850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000004.1Sequence record reported by the local genomic context database.
Genomic interval62 062-63 480 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 391-63 480 ntGCF_042884815::NZ_JBHVTE010000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span61 391-63 480 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 391 nt63 480 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVT4_RS05845GCF_042884815#ACFVT4_RS05845
RROmpR
61 391-62 065 nt · Forward (+)
ACFVT4_RS05850GCF_042884815#ACFVT4_RS05850
HKClassicCurrent focus
62 062-63 480 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000517985#C174_RS04625Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1697052
Simplified PFAM architecture for HKOC_1697052
PFAM domain coverage: 353 / 472 aa (74.8%)
1 aa472 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[42-165] | HAMP[188-240] | HisKA[246-312] | HATPase_c[361-469]
- Domain count: 4
- Matched identifier: HKOC_1697052
- Positioned domains: ArlS_N 42-165 ; HAMP 188-240 ; HisKA 246-312 ; HATPase_c 361-469
Cluster members and taxonomy
Representative gene: GCF_000517985#C174_RS04625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key