1 HisKA#1
221-285 aa · 65 aa · 14.8% of protein
Raw token
HisKA:221:1.29e-16:285:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVT4_RS05825
Histidine kinase, Classic
Bacillus mycoides · GCF_042884815
ClassHKTypeClassicLength439 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_042884815#ACFVT4_RS05825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 439 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
325-428 aa · 104 aa · 23.7% of protein
Raw token
HATPase_c:325:2.72e-23:428:107:109- Raw architecture: HisKA:221:1.29e-16:285:65:64#HATPase_c:325:2.72e-23:428:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_042884815::NZ_JBHVTE010000004.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span57845-59164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVT4_05825RefSeq proteinWP_328070746.1
Context group ID
GCF_042884815::NZ_JBHVTE010000004.1::G00015Context members
ACFVT4_RS05825
Partner locus tags
ACFVT4_RS05825
Partner old locus tags
ACFVT4_05825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_328070746.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVT4_RS05825Primary locus identifier stored in the genes table.
Old locus tagACFVT4_05825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVTE010000004.1Sequence record reported by the local genomic context database.
Genomic interval57 845-59 164 nt1 320 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 845-59 164 ntGCF_042884815::NZ_JBHVTE010000004.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042884815::NZ_JBHVTE010000004.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVTE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span57 845-59 164 nt1 320 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 845 nt59 164 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ACFVT4_RS05825GCF_042884815#ACFVT4_RS05825
HKClassicCurrent focus
57 845-59 164 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_036222645#P9452_RS25755Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2089187
Simplified PFAM architecture for HKOC_2089187
PFAM domain coverage: 323 / 439 aa (73.6%)
1 aa439 aa
5TM-5TMR_LYTHisKAHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + HisKA + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[39-194] | HisKA[221-283] | HATPase_c[326-429]
- Domain count: 3
- Matched identifier: HKOC_2089187
- Positioned domains: 5TM-5TMR_LYT 39-194 ; HisKA 221-283 ; HATPase_c 326-429
Cluster members and taxonomy
Representative gene: GCF_036222645#P9452_RS25755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042884815
AssemblyASM4288481v1 · Scaffoldhaploid
Genome composition6 030 294 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 138 · HK 73 · RR 65CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key