1 Response_reg#1
4-107 aa · 104 aa · 40.8% of protein
Raw token
Response_reg:4:4.03e-25:107:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVWC_RS23680
Response regulator, unclassified
Bacillus mycoides · GCF_042883425
ClassRRTypeunclassifiedLength255 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042883425#ACFVWC_RS23680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length255 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage104 / 255 aa (40.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa255 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:4.03e-25:107:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042883425::NZ_JBHVVQ010000013.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59854-63557Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVWC_23680RefSeq proteinWP_016096990.1
Context group ID
GCF_042883425::NZ_JBHVVQ010000013.1::G00052Context members
ACFVWC_RS23675ACFVWC_RS23680
Partner locus tags
ACFVWC_RS23675ACFVWC_RS23680
Partner old locus tags
ACFVWC_23675ACFVWC_23680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016096990.1Primary protein accession used for annex mappings.
UniProt accessionR8CKT9Primary UniProt accession resolved in the annex database.
UniProt IDR8CKT9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVWC_RS23680Primary locus identifier stored in the genes table.
Old locus tagACFVWC_23680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVQ010000013.1Sequence record reported by the local genomic context database.
Genomic interval62 790-63 557 nt768 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span59 854-63 557 ntGCF_042883425::NZ_JBHVVQ010000013.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042883425::NZ_JBHVVQ010000013.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVQ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span59 854-63 557 nt3 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 854 nt63 557 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVWC_RS23675GCF_042883425#ACFVWC_RS23675
HKHybrid
59 854-62 802 nt · Forward (+)
ACFVWC_RS23680GCF_042883425#ACFVWC_RS23680
RRunclassifiedCurrent focus
62 790-63 557 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS01690Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0680104
Simplified PFAM architecture for RROC_0680104
PFAM domain coverage: 106 / 255 aa (41.6%)
1 aa255 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-109]
- Domain count: 1
- Matched identifier: RROC_0680104
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS01690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042883425
AssemblyASM4288342v1 · Scaffoldhaploid
Genome composition5 980 078 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key