1 HAMP#1
56-125 aa · 70 aa · 19.6% of protein
Raw token
HAMP:56:0.0000000105:125:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVWC_RS20960
Histidine kinase, Classic
Bacillus mycoides · GCF_042883425
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042883425#ACFVWC_RS20960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 358 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-200 aa · 64 aa · 17.9% of protein
Raw token
HisKA:137:0.00000000000000157:200:64:643 HATPase_c#3
250-347 aa · 98 aa · 27.4% of protein
Raw token
HATPase_c:250:7.22e-16:347:98:109- Raw architecture: HAMP:56:0.0000000105:125:70:69#HisKA:137:0.00000000000000157:200:64:64#HATPase_c:250:7.22e-16:347:98:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042883425::NZ_JBHVVQ010000009.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span183712-185471Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVWC_20960RefSeq proteinWP_016095391.1
Context group ID
GCF_042883425::NZ_JBHVVQ010000009.1::G00045Context members
ACFVWC_RS20960ACFVWC_RS20965
Partner locus tags
ACFVWC_RS20960ACFVWC_RS20965
Partner old locus tags
ACFVWC_20960ACFVWC_20965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095391.1Primary protein accession used for annex mappings.
UniProt accessionR8D728Primary UniProt accession resolved in the annex database.
UniProt IDR8D728_BACCEDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVWC_RS20960Primary locus identifier stored in the genes table.
Old locus tagACFVWC_20960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval183 712-184 788 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span183 712-185 471 ntGCF_042883425::NZ_JBHVVQ010000009.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042883425::NZ_JBHVVQ010000009.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span183 712-185 471 nt1 760 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
183 712 nt185 471 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVWC_RS20960GCF_042883425#ACFVWC_RS20960
HKClassicCurrent focus
183 712-184 788 nt · Reverse (-)
ACFVWC_RS20965GCF_042883425#ACFVWC_RS20965
RROmpR
184 785-185 471 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398965#IGA_RS12440Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2759140
Simplified PFAM architecture for HKOC_2759140
PFAM domain coverage: 211 / 358 aa (58.9%)
1 aa358 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-124] | HisKA[137-200] | HATPase_c[250-353]
- Domain count: 3
- Matched identifier: HKOC_2759140
- Positioned domains: HAMP 82-124 ; HisKA 137-200 ; HATPase_c 250-353
Cluster members and taxonomy
Representative gene: GCF_000398965#IGA_RS12440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042883425
AssemblyASM4288342v1 · Scaffoldhaploid
Genome composition5 980 078 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key