1 HisKA_3#1
403-467 aa · 65 aa · 10.5% of protein
Raw token
HisKA_3:403:3.2e-17:467:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVWC_RS19915
Histidine kinase, Classic
Bacillus mycoides · GCF_042883425
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042883425#ACFVWC_RS19915Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 619 aa (24.6%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
517-603 aa · 87 aa · 14.1% of protein
Raw token
HATPase_c:517:0.0000000000000216:603:97:109- Raw architecture: HisKA_3:403:3.2e-17:467:65:68#HATPase_c:517:0.0000000000000216:603:97:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042883425::NZ_JBHVVQ010000008.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174612-177084Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVWC_19915RefSeq proteinWP_390187676.1
Context group ID
GCF_042883425::NZ_JBHVVQ010000008.1::G00039Context members
ACFVWC_RS19910ACFVWC_RS19915
Partner locus tags
ACFVWC_RS19910ACFVWC_RS19915
Partner old locus tags
ACFVWC_19910ACFVWC_19915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_390187676.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVWC_RS19915Primary locus identifier stored in the genes table.
Old locus tagACFVWC_19915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVQ010000008.1Sequence record reported by the local genomic context database.
Genomic interval175 225-177 084 nt1 860 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span174 612-177 084 ntGCF_042883425::NZ_JBHVVQ010000008.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042883425::NZ_JBHVVQ010000008.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVQ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span174 612-177 084 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 612 nt177 084 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVWC_RS19910GCF_042883425#ACFVWC_RS19910
RRNarL
174 612-175 250 nt · Reverse (-)
ACFVWC_RS19915GCF_042883425#ACFVWC_RS19915
HKClassicCurrent focus
175 225-177 084 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042883425#ACFVWC_RS19915The current gene is the representative for this cluster.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0977254
Simplified PFAM architecture for HKOC_0977254
PFAM domain coverage: 159 / 619 aa (25.7%)
1 aa619 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[511-604]
- Domain count: 2
- Matched identifier: HKOC_0977254
- Positioned domains: HisKA_3 403-467 ; HATPase_c 511-604
Cluster members and taxonomy
Representative gene: GCF_042883425#ACFVWC_RS19915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042883425
AssemblyASM4288342v1 · Scaffoldhaploid
Genome composition5 980 078 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key