1 HAMP#1
288-355 aa · 68 aa · 11.4% of protein
Raw token
HAMP:288:0.000000000000966:355:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ACFVWC_RS12725
Histidine kinase, Classic
Bacillus mycoides · GCF_042883425
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_042883425#ACFVWC_RS12725Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 594 aa (40.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation3 items
2 HisKA#2
375-439 aa · 65 aa · 10.9% of protein
Raw token
HisKA:375:0.000000000000842:439:65:643 HATPase_c#3
483-590 aa · 108 aa · 18.2% of protein
Raw token
HATPase_c:483:3.08e-20:590:109:109- Raw architecture: HAMP:288:0.000000000000966:355:68:69#HisKA:375:0.000000000000842:439:65:64#HATPase_c:483:3.08e-20:590:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_042883425::NZ_JBHVVQ010000004.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span360464-362931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagACFVWC_12725RefSeq proteinWP_016095763.1
Context group ID
GCF_042883425::NZ_JBHVVQ010000004.1::G00023Context members
ACFVWC_RS12725ACFVWC_RS12730
Partner locus tags
ACFVWC_RS12725ACFVWC_RS12730
Partner old locus tags
ACFVWC_12725ACFVWC_12730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016095763.1Primary protein accession used for annex mappings.
UniProt accessionR8D3K0Primary UniProt accession resolved in the annex database.
UniProt IDR8D3K0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagACFVWC_RS12725Primary locus identifier stored in the genes table.
Old locus tagACFVWC_12725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JBHVVQ010000004.1Sequence record reported by the local genomic context database.
Genomic interval360 464-362 248 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span360 464-362 931 ntGCF_042883425::NZ_JBHVVQ010000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_042883425::NZ_JBHVVQ010000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JBHVVQ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span360 464-362 931 nt2 468 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 464 nt362 931 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ACFVWC_RS12725GCF_042883425#ACFVWC_RS12725
HKClassicCurrent focus
360 464-362 248 nt · Reverse (-)
ACFVWC_RS12730GCF_042883425#ACFVWC_RS12730
RROmpR
362 245-362 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161335#BCERE0026_RS14860Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1087041
Simplified PFAM architecture for HKOC_1087041
PFAM domain coverage: 222 / 594 aa (37.4%)
1 aa594 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[306-355] | HisKA[375-439] | HATPase_c[484-590]
- Domain count: 3
- Matched identifier: HKOC_1087041
- Positioned domains: HAMP 306-355 ; HisKA 375-439 ; HATPase_c 484-590
Cluster members and taxonomy
Representative gene: GCF_000161335#BCERE0026_RS14860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_042883425
AssemblyASM4288342v1 · Scaffoldhaploid
Genome composition5 980 078 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 119 · HK 64 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key